BMS 114 · Common Core (Tronc commun)Section 4.2 · Morphology, classification and naming
Section 15 of 33
Spirochaetes, rickettsiae and chlamydiae
Explain what spirochaetes, rickettsiae and chlamydiae are, why an organism can be a true bacterium and still depend on a living host cell, and how that dependence changes the specimen, the drug and the nursing care.
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Why this matters
These three groups break the rule you will use everywhere else — that a bacterium is something you can grow on a plate and kill with a penicillin. Because they live inside cells, the ordinary wound swab or urine culture may grow nothing at all, and the antibiotic that works for most bacteria may never reach them. A nurse who understands this asks for the right specimen, watches for the signs of relapsing fever, Weil’s disease or trachoma, and can explain to a patient why a tetracycline or a macrolide is being used instead of the familiar penicillin.
What you need to know first
You should already know what a bacterium is, that the Gram stain separates bacteria into Gram-positive and Gram-negative, that bacteria normally multiply by binary fission, and that an antibiotic must physically reach the organism in order to act. The three groups below are ordinary bacteria with one unusual habit; they are not viruses, and this section will keep showing you why.
Words to know (5)
Spirochaete
A flexible, coiled, motile bacterium that progresses by rapid body movements rather than by external flagella alone, and that stains poorly by the Gram method. Treponema pallidum, the cause of syphilis, is a spirochaete, and it is grouped in the treponemes.
Obligate intracellular bacterium
A true bacterium that cannot multiply outside a living host cell, because it depends on that cell for the energy-rich molecules it cannot make itself. Rickettsia species and Chlamydia trachomatis are obligate intracellular bacteria.
Binary fission
The division of one bacterium into two identical daughter cells; it is the normal way bacteria multiply. The supplied notes print “binary fusion” for the rickettsiae, which is a misprint — no such process exists. Rickettsiae multiply by binary fission inside the cells they infect.
Arthropod vector
A living carrier — usually a tick, a mite, a flea or a louse — that transmits an infectious organism from one host to another when it feeds. Rocky Mountain spotted fever reaches people through the bite of an infected tick.
Relapsing fever
A febrile illness caused by Borrelia species in which attacks of fever alternate with afebrile intervals, because the organism repeatedly changes its surface proteins. Louse-borne relapsing fever is caused by Borrelia recurrentis, carried by the body louse.
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In one sentence Spirochaetes are flexible, coiled, motile bacteria that travel by rapid body movements and stain poorly with the Gram method.
Spirochaetes: flexible coiled bacteria in three body plans
Spirochaetes are long, thin, helically coiled bacteria, and their flexibility is the whole point. Instead of a rigid rod pushed by flagella that stick out into the surrounding fluid, a spirochaete carries axial filaments — flagella enclosed between its inner and outer membranes — so the entire cell screws its way through viscous material such as mucus or connective tissue. That is what the notes mean when they say these organisms progress by rapid body movements rather than by ordinary swimming. They are also poorly stained by the Gram method, because the cells are extremely thin and their wall holds the crystal violet–iodine complex weakly, so a Gram film may honestly report that no organisms were seen even when the organism is present. In the laboratory they are shown instead by dark-ground microscopy or by silver impregnation. The group is separated by the shape of the coil: treponemes are thin and delicate with regular tight coils (Treponema pallidum, Treponema pertenue); borreliae are larger with irregular open coils; and leptospires are thin with so many tightly packed coils that the individual turns are difficult to tell apart.
For example
A patient has a painless genital ulcer, but the Gram stain of the ulcer fluid shows nothing useful. The diagnosis is made instead by dark-ground microscopy, which shows the fine, tightly coiled Treponema pallidum against a black background.
Pause and check yourself
A specimen is reported as “Gram stain: no organisms seen” and is later confirmed to contain Treponema pallidum. How is that possible?
Show the answer
Spirochaetes are extremely thin and their cell wall retains the Gram reagents poorly, so they are often invisible or only faintly visible on a Gram film. The organism is not absent; it is simply not demonstrated by that method, which is why dark-ground microscopy, silver staining or a molecular test is used instead.
Read detailed explanations
The laboratory problem: organisms that refuse to grow on a plate
Ordinary diagnostic bacteriology rests on one assumption: place the specimen on a nutrient agar plate, incubate it overnight at 37 °C, and the organism will appear as colonies. Spirochaetes, rickettsiae and chlamydiae each break that assumption, and each breaks it for a different reason. Rickettsiae and chlamydiae are obligate intracellular organisms: they cannot generate enough ATP of their own and must be inside a eukaryotic cell, so a plate of agar — however rich — supplies nutrients but no host cell, and nothing grows. Spirochaetes are not intracellular in the same way, but they are fastidious and slow: Treponema pallidum has never been cultured routinely on artificial media, and Leptospira needs a specialised medium containing serum or albumin, grows slowly, and is easily overgrown or lost. The laboratory therefore reaches for other tools. Spirochaetes are demonstrated directly: dark-ground or phase-contrast microscopy shows living, motile, tightly coiled cells in a fresh specimen, while silver impregnation stains and direct fluorescent antibody tests reveal them in tissue. Rickettsiae and chlamydiae are demonstrated indirectly: cell culture using living monolayers (McCoy cells are the classic line for Chlamydia trachomatis), embryonated hen’s eggs or laboratory animals for rickettsiae, and above all nucleic acid amplification and serology. Serology is the workhorse, and it carries a rule the nurse must know: because antibodies take one to two weeks to rise, a single early serum sample is often negative, and a second, convalescent sample taken about two weeks later must be paired with it. A missing convalescent sample is not a laboratory delay; it is a follow-up failure by the clinical team. Specimen choice changes too: whole blood in an anticoagulant tube for molecular testing of leptospirosis, a midstream urine or endocervical swab in the correct transport medium for chlamydial nucleic acid testing, and a biopsy or skin lesion for rickettsial polymerase chain reaction. Because none of these results is available at the bedside within the hour, treatment for a seriously ill patient begins empirically, on the clinical pattern and the exposure history.
Relapsing fever and Weil’s disease: how these organisms damage a patient
Two diseases in this group show how the lifestyle of the organism produces the symptoms. Relapsing fever is caused by Borrelia species. The supplied notes print “Bornelia recurrentis”; the correct name is Borrelia recurrentis, and the genus is Borrelia. Borrelia recurrentis is louse-borne: the body louse takes the organism up when it feeds on an infected person, and infection passes to the next person when the crushed louse is rubbed into a bite or a scratch. Tick-borne relapsing fever, caused by other Borrelia species transmitted by soft ticks of the genus Ornithodoros, behaves in much the same way clinically. Fever comes in attacks separated by afebrile intervals of several days because the organism performs antigenic variation: as the patient’s antibodies clear the dominant surface protein, called the variable major protein, a small sub-population that has switched to a different version survives and multiplies, producing the next attack. This is why a patient can look well and be discharged, then return with fever, and why a single blood film taken during an afebrile interval may be negative. Nurses should expect rigors and a rising temperature after the first effective dose — the Jarisch–Herxheimer reaction — and monitor the blood pressure rather than dismiss it as a drug allergy. Weil’s disease is the severe form of leptospirosis, most often caused by Leptospira interrogans. The notes print “Leptora interrogans”; the correct genus is Leptospira. After entering through broken skin or a mucous membrane, the organism spreads through the blood and then settles in the kidney, the liver, the meninges and the eye. Capillary walls are damaged, so plasma leaks into the tissues and small haemorrhages appear, which is why the patient has muscle pain and red eyes, then jaundice with a high bilirubin, and later acute kidney injury from tubular damage. The illness can progress to haemorrhage into the lungs or gut, myocarditis and death. Treatment is a penicillin or doxycycline plus supportive care, and dialysis in severe cases. The nursing priorities follow from the mechanism: strict fluid balance and daily weight, accurate urine output, watching for bleeding gums, epistaxis, haemoptysis and black stool, and monitoring for confusion that may signal meningitis. Jaundice with a falling urine output in a patient who has waded in flood water is a medical emergency, not a reason to wait for a serology result that will arrive in two weeks.
Why the drug must enter the cell — and how the nurse gives it safely
The choice of drug for these infections follows from one rule of pharmacology: an antimicrobial reaches only the compartments it can enter. A bacterium free in the blood or in interstitial fluid is exposed to the drug concentration in plasma. A bacterium inside a macrophage, an endothelial cell or an epithelial cell is exposed only to the concentration inside that cell, so the decisive property is not how potent the drug looks in a test tube but how well it crosses the human cell membrane and accumulates where the organism sits. Doxycycline is strongly lipophilic, enters human cells readily and inhibits the bacterial ribosome at the 30S subunit. Macrolides — azithromycin, erythromycin and clarithromycin — are also concentrated inside cells, where they bind the 50S subunit. Both classes are therefore active against rickettsiae and chlamydiae. Beta-lactams act on the peptidoglycan wall of a multiplying bacterium in the extracellular space; for organisms living inside cells that target may be absent or unreachable, and in chlamydial infection the metabolically active form has a different surface chemistry, so penicillins are not the drugs of choice. Azithromycin has a further advantage: it reaches high concentrations inside cells, remains there for days, and can be given as a single 1 g dose for uncomplicated genital chlamydial infection, which matters enormously for adherence and for treating the partner. The nursing detail is equally pharmacological. Doxycycline should be swallowed with a full glass of water while sitting or standing and not at bedtime, because it can ulcerate the oesophagus if it lodges there. It chelates calcium, iron and magnesium, so milk, antacids and iron tablets must be separated from the dose by at least two hours, otherwise the drug is swallowed but never absorbed. It causes photosensitivity, so the patient needs sun protection and advice, and it is avoided in pregnancy and in young children except when a serious rickettsial infection makes the benefit greater than the risk. Finally, adherence is a microbiological act: an interrupted course lets surviving organisms return, and for chlamydial infection it also leaves the partner untreated and the patient reinfected. The nurse who explains why the tablets must be taken with water and away from milk, and who arranges treatment for the partner, is applying cell biology at the bedside.
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Three spirochaete body plans, and the intracellular life of rickettsiae and chlamydiae
The three bands at the top are drawn to their described coil shapes: regular tight coils, large irregular open coils, and coils so numerous and packed that the individual turns are hard to separate. Below them, the host-cell panel shows the shared property of rickettsiae and chlamydiae — entry, multiplication by binary fission inside the cell, and release — and the foot of the plate states the two practical consequences for the nurse.
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Treponema: thin, delicate, regular tight coils
The treponemes are the finest of the three, with evenly spaced, tightly wound coils. Treponema pallidum causes syphilis and Treponema pertenue causes yaws. The cells are so thin, and their wall holds the Gram reagents so poorly, that a Gram film often reports no organisms even when the patient is infected, which is why dark-ground microscopy, silver impregnation or a molecular test is used instead.
Schematic plate, not to scale: the coil drawings exaggerate the spacing of the turns so that the three body plans can be compared, and the host-cell panel is a generalised eukaryotic cell, not one specific tissue. Coil shape is the classical character used to separate the groups; modern identification of these organisms also uses molecular methods.
Key points to remember
✓Spirochaetes are flexible, coiled, motile bacteria that move by rapid body movements and stain poorly by the Gram method.
✓They are divided by coil shape into treponemes (thin, regular tight coils), borreliae (large, irregular open coils) and leptospires (thin, many tightly packed coils).
✓Rickettsiae and chlamydiae are true bacteria — both RNA and DNA, their own enzymes, binary fission, peptidoglycan in the rickettsiae — but they replicate only inside living cells.
✓Because the organism sits inside a cell, treatment uses cell-penetrating drugs (tetracyclines, macrolides) rather than penicillin, and diagnosis uses microscopy, molecular tests and paired serology rather than routine culture.
Go deeper
Worked example
From a flooded field to a treated leptospirosis. A 34-year-old market gardener is admitted with five days of fever, severe headache and pain in both calves, and red eyes. Today the skin and the whites of the eyes have turned yellow, and the patient has passed only a small amount of dark urine since yesterday. The patient mentions having worked knee-deep in flooded vegetable beds after heavy rain, wearing open sandals, and having seen rats around the store. You are the nurse admitting the patient.
Recognise the pattern and take the exposure history. Fever, severe calf myalgia, red eyes and jaundice after working in flood water are the classic picture of leptospirosis, and the conjunctival redness without pus is a useful clue. Ask directly about water contact, rodents, farming, fishing and animals, because the diagnosis is made on the exposure as much as on the examination.
Collect the right specimens and understand what the laboratory can and cannot do. Leptospira will not appear on ordinary agar and is not seen on a Gram film. Send whole blood in an anticoagulant tube for molecular testing in the first week, and urine later; send a serum sample now and plan a second, convalescent sample about two weeks later, because antibodies rise slowly and a single early result is often negative. Do not let the absence of a routine culture result delay treatment of a patient who is jaundiced and oliguric.
Support the patient while the antibiotic acts. The prescriber starts a penicillin or doxycycline; your work is the fluid balance, an accurate record of urine output, daily weight, and observation for bleeding gums, nosebleeds, blood in the sputum or black stool, and for confusion that may signal meningitis. Watch the blood pressure closely after the first dose, because fever and rigors can follow it.
Close the loop with prevention and education. Explain that the organism came from rodent urine in the water and not from another person, so no isolation is needed, and teach the patient to wear boots and gloves for wet work and to cover any cut before entering water. Report the case so that rodent control and water advice can be given to the other workers, and arrange the convalescent blood sample before discharge so that the diagnosis is confirmed after the patient has gone home.
Nothing in this case was decided by a routine culture plate. The diagnosis came from a clinical pattern plus an exposure history, the confirmation came from molecular and paired serological tests, the treatment came from a drug that reaches an organism living in tissue, and the outcome depended on the nursing observation of urine output, bleeding and blood pressure. That is what it means to nurse an infection caused by an organism that will not grow on agar.
Common misconception
The most common beginner error is to conclude that if an organism cannot be grown on an ordinary agar plate, or cannot be seen on a Gram film, it must be a virus. Rickettsiae and chlamydiae contain both DNA and RNA, multiply by binary fission and possess their own enzymes; rickettsiae even have a peptidoglycan wall. They are bacteria whose habitat is the inside of a cell — an obligate intracellular lifestyle, not a viral nature. A second error is to assume that the antibiotic that usually works will work here. A beta-lactam that acts on a growing extracellular bacterium may never reach an organism sitting in the cytoplasm, which is why the drug must be chosen for its ability to enter human cells and not only for its strength in the laboratory.
Check your reasoning
Think of a patient you have nursed or read about who had a fever that no routine culture explained. Which of the three groups in this section could have been responsible, which specimen would you send now, and which nursing observation would tell you that the patient was getting worse?
Reveal an answer
Take the farmer in the worked example. Leptospira interrogans is the likely organism, so the specimens are whole blood in an anticoagulant tube for molecular testing and a serum sample paired with a convalescent sample about two weeks later; a routine culture is not the answer. The observations that signal deterioration are a falling urine output despite fluid intake, a rising or falling blood pressure, new bleeding from the gums or nose, blood in the sputum, and new confusion. Each of those is a sign that the capillary and kidney damage of severe leptospirosis is progressing, and each is something the nurse sees before any laboratory report exists.
Where this comes from
BMS 114 General Microbiology I lecture notes (supplied) · “Spirochaetes”, “Rickettsiae” and “Chlamydiae” entries, lines 754–774
Correction to the supplied notes — wrong organism names and “binary fusion” · Correction to the supplied notes: line 760 prints “Bornelia recurrentis” for Borrelia recurrentis; line 762 prints “Leptora interrogans” for Leptospira interrogans; line 768 states that rickettsiae “multiply by binary fusion”, which should read binary fission. All three are corrected and labelled in the prose of this section.
Beyond the supplied notes — transmission routes, obligate intracellular therapy and laboratory diagnosis · rickettsial transmission by ticks, mites, fleas and lice, Chlamydia trachomatis by direct contact and Leptospira from water contaminated by rodent urine; the choice of cell-penetrating drugs (tetracyclines and macrolides rather than penicillin); the culture difficulties, paired serology and molecular testing; and the mechanisms of relapsing fever and Weil’s disease. The supplied notes (lines 754–774) describe morphology only and name no route of transmission, no laboratory method and no treatment.
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About this course and its sources
Bilingual lessons organised from the supplied BMS 114 General Microbiology I lecture notes (Mr Ngotelo F. Ambene, Mr Lyonga B. Lyonga & Mr Fumbui Louis Ngong). Diagrams are original educational schematics; sections that correct the notes or go beyond them say so in their sources. Nursing and French-language review are pending.